Dongjun Chung, PhD
- Director
BISR Leadership
Maciej Pietrzak, PhD
- Technical Director
Our Faculty
Our Bioinformaticians
office: 340-16 Lincoln Tower
email: AyseSelen.Yilmaz@osumc.edu
Education:
- MS in Computer and Information Science | 2000 - 2001 University Of Central Florida, Orlando FL USA
- BS in Computer and Information Science | 1993 - 1997 Yildiz Technical University, Istanbul, Turkiye
Research Interests:
- Building workflows for processing variety of genomic data on cluster computing environment: Transcriptome, ExomeSeq and TargetedSeq, Whole Genome, ChipSeq, ATAC-Seq
- Sequencing Quality control, Expression quantification, Variant calling, annotation, filtering and integrative genomics and Pathway Enrichment Analysis
Selected Collaborations:
- Department of Internal Medicine
- Division of Hematology
- Division of Endocrinology
- Department of Surgery
- Ohio State Comprehensive Wound Center
- Department of Cancer Biology and Genetics
- College of Veterinary Medicine and OSU Comprehensive Cancer Center
- James Cancer Hospital and Solove Research Institute
office: 340-06 Lincoln Tower
email: Patrick.Stevens@osumc.edu
Education:
- M.S., Bioinformatics, Indiana University Purdue University Indianapolis, Indianapolis 2019
- B.S., Biology, Penn State Behrend, Erie, PA 2017
Research Interests:
- Expression quantification of single-cell RNA sequencing transcriptome data and integration of other single-cell genomic methods
- Analysis and Integration of Single Cell ATAC, TCR/BCR and 10x Genomic Multiomics
- Somalogic Proteomics
- Nanopore cDNA and direct RNA sequencing
office: 340 Lincoln Tower
email: Garrett.Kinnebrew@osumc.edu
Education:
- M.D., Indiana University, School of Medicine, 2009
- B.S., Biomedical Engineering, Columbia University, 2005
Areas of Expertise:
- Metabolomics Analysis, including experimental design, metabolite identification and quantification, and pathway analysis
- Liquid Chromatography/Mass Spectrometry (LC/MS) Analysis
office: 3010-22 Pelotonia Research Center
email: Kairavee.Thakkar@osumc.edu
Education:
- Ph.D. in Systems Biology and Physiology, University of Cincinnati (Cincinnati Children’s Hospital Medical Center), 2025
- M.S. in Applied Mathematics, University of Cincinnati, 2020
- B.S. in Mathematics, University of Cincinnati, 2018
Selected Collaborations:
- Single-cell RNA sequencing analysis
- Lineage trajectory inference and lineage tracing data analysis
- TCR-seq and BCR-seq analysis
- Large-scale single-cell RNA sequencing cohort analysis
- Spatial transcriptomics analysis
- Computational tool development and applications
office: 3010 Pelotonia Research Center
email: shaohong.feng@osumc.edu
Education:
- M.S. Engineering, Huazhong University of Science and Technology, China, 2006
- B.S. Engineering, Wuhan University of Technology, China, 1999
Research Interests:
- LLM Application in Biomedical
- Cloud infrastructure and Cloud Application
Selected Collaborations:
- Department of Internal Medicine
- Department of Biomedical Informatics
Our Project Managers
Office: 220-28 Lincoln Tower
Email: ian.chiofolo@osumc.edu
Education:
- BA Theatre Studies, Kent State University, 2013
Areas of expertise:
- Project management implementation and execution
Selected collaborations:
- PCORnet
- PaTH
- GMO
- SPO
- TCO
- NIH funded D4I
- BRANCH
- BISR