The Single Cell Omics Core facilitates the generation and analyses of single cell libraries to produce publication quality data. Expertise with scRNA-seq, scATAC-seq and multi-omics.
Core Director
Andy Fischer, PhD
Andrew.Fischer@osumc.edu
Core Manager
Heithem El-Hodiri
Heithem.El-Hodiri@osumc.edu
614-292-1226
Location
Graves Hall
Available Services and Equipment
Services
- Consulting – experiment design strategies, best reagents, techniques, sequencing strategies
- 10X genomics or Pip-seq
- Cell dissociation and/or nuclei preparations
- Library preparation – loading cells into Cell Controller, tagmentation, clean-up, prep for sequencing
- Bioinformatics – help with OSC supercomputer for 10X CellRanger
- Bioinformatic analyses – Seurat, Monocle, Signac, CellChat, SingleCellSignalR, motif analyses, SoupOrCell, different Integration strategies, overlays of query libraries onto establishedtrajectories, GO enrichment analyses, etc.
Equipment
- 10X Chromium Cell Controller
- 10X Chromium X Controller
- BioRad PCR machine
- Miltenyi OCTO tissue dissociator
- Miltenyi MACs
- Countess II automated cell counter
- 4 Dell/Apple Workstations
- Heating blocks, mini-spin, refrigerated centrifuge, approved pipettemen
User Fees
Contact Director
Selected Publications
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2023
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2022
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2021
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2020
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2019